Mizuno et al. observed that a putative hydrogen-bond-donating serine residue located in the beta-barrel wall was required for a bright on-state, and that the wall of the beta-barrel structure near the chromophore becomes flexible in the off state, as detected by NMR [ 32]. The authors proposed that, instead of cis–trans isomerization driving protonation and an absorbance shift of the chromophore, protonation of the chromophore (through an unspecified process) first removes a hydrogen-bonding PARP inhibitor interaction with Ser142 in the beta-barrel wall, leading to local beta-barrel unfolding and then chromophore flexibility that lowers quantum

yield. However, the necessity of the beta barrel flexibility for loss of fluorescence was challenged by experiments showing that crystals in the off-state were as dim at ∼170 K as at room temperature [31]. If motion in the beta barrel

were required for complete off-switching via quantum yield suppression, the off-state protein would be expected to be brighter at low temperatures, where motion is reduced, compared to room temperature, but this was not observed [31]. A mechanistic model that could account for all these observations could be that photoinduced cis–trans isomerization and loss of the hydrogen bond with Ser142 occurs together. At room temperature, this leads to beta-barrel disorder and then chromophore conformational this website flexibility, as was observed

by NMR. The chromophore becomes protonated due to the loss of stabilization of the anionic state by the hydrogen bond from Ser142. At low temperatures, the beta barrel may be essentially well ordered, and the chromophore may also be confined to a more restricted set of trans conformations. However, the chromophore could still become protonated from the loss of stabilization of the anionic state, and there may still be enough chromophore motion in the trans conformation to render it non-fluorescent. Regardless, some transient expansion or ‘breathing’ of the barrel may be required for off-switching, as viscosity in the surrounding www.selleck.co.jp/products/hydroxychloroquine-sulfate.html environment [ 35•] and Dronpa oligomerization [ 10] result in slower kinetics of Dronpa off-photoswitching. A unique photoswitchable FP, Dreiklang [24•], utilizes a completely different switching mechanism. Instead of cis–trans isomerization, the chromophore of Dreiklang undergoes a reversible hydration/dehydration reaction on a carbon atom in the imidazolinone ring ( Figure 3). The hydration shortens the chromophoric π-electron system and makes the absorption wavelengths further blue-shifted.